[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: priscilla & t)

EMDB-17819:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

EMDB-17849:
XBB 1.0 RBD bound to P4J15 (Global)
Method: single particle / : Duhoo Y, Lau K

EMDB-17850:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

PDB-8pq2:
XBB 1.0 RBD bound to P4J15 (Local)
Method: single particle / : Duhoo Y, Lau K

PDB-8psd:
SARS-CoV-2 XBB 1.0 closed conformation.
Method: single particle / : Duhoo Y, Lau K

EMDB-15592:
BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqw:
BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-14922:
cryo-EM structure of omicron spike in complex with de novo designed binder, full map
Method: single particle / : Pablo G, Sarah W, Alexandra VH, Anthony M, Andreas S, Zander H, Dongchun N, Shuguang T, Freyr S, Casper G, Priscilla T, Alexandra T, Stephane R, Sandrine G, Jane M, Aaron P, Zepeng X, Yan C, Pu H, George G, Elisa O, Beat F, Didier T, Henning S, Michael B, Bruno EC

PDB-7zrv:
cryo-EM structure of omicron spike in complex with de novo designed binder, full map
Method: single particle / : Pablo G, Sarah W, Alexandra VH, Anthony M, Andreas S, Zander H, Dongchun N, Shuguang T, Freyr S, Casper G, Priscilla T, Alexandra T, Stephane R, Sandrine G, Jane M, Aaron P, Zepeng X, Yan C, Pu H, George G, Elisa O, Beat F, Didier T, Henning S, Michael B, Bruno EC

EMDB-14930:
cryo-EM structure of omicron spike in complex with de novo designed binder, local
Method: single particle / : Pablo G, Sarah W, Alexandra VH, Anthony M, Andreas S, Zander H, Dongchun N, Shuguang T, Freyr S, Casper G, Priscilla T, Alexandra T, Stephane R, Sandrine G, Jane M, Aaron P, Zepeng X, Yan C, Pu H, George G, Elisa O, Beat F, Didier T, Henning S, Michael B, Bruno EC

EMDB-14947:
cryo-EM structure of D614 spike in complex with de novo designed binder, full and local maps(addition)
Method: single particle / : Pablo G, Sarah W, Alexandra VH, Anthony M, Andreas S, Zander H, Dongchun N, Shuguang T, Freyr S, Casper G, Priscilla T, Alexandra T, Stephane R, Sandrine G, Jane M, Aaron P, Zepeng X, Yan C, Pu H, George G, Elisa O, Beat F, Didier T, Henning S, Michael B, Bruno EC

PDB-7zsd:
cryo-EM structure of omicron spike in complex with de novo designed binder, local
Method: single particle / : Pablo G, Sarah W, Alexandra VH, Anthony M, Andreas S, Zander H, Dongchun N, Shuguang T, Freyr S, Casper G, Priscilla T, Alexandra T, Stephane R, Sandrine G, Jane M, Aaron P, Zepeng X, Yan C, Pu H, George G, Elisa O, Beat F, Didier T, Henning S, Michael B, Bruno EC

PDB-7zss:
cryo-EM structure of D614 spike in complex with de novo designed binder
Method: single particle / : Pablo G, Sarah W, Alexandra VH, Anthony M, Andreas S, Zander H, Dongchun N, Shuguang T, Freyr S, Casper G, Priscilla T, Alexandra T, Stephane R, Sandrine G, Jane M, Aaron P, Zepeng X, Yan C, Pu H, George G, Elisa O, Beat F, Didier T, Henning S, Michael B, Bruno EC

EMDB-15588:
BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15589:
Beta SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15590:
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15591:
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqs:
BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqt:
Beta SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqu:
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqv:
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-14141:
SARS-CoV-2 S Omicron Spike B.1.1.529 - 3-P2G3 and 1-P5C3 Fabs (Global)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

EMDB-14142:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD up - 1-P2G3 and 1-P5C3 Fabs (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

EMDB-14143:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD down - 1-P2G3 Fab (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

PDB-7qti:
SARS-CoV-2 S Omicron Spike B.1.1.529 - 3-P2G3 and 1-P5C3 Fabs (Global)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

PDB-7qtj:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD up - 1-P2G3 and 1-P5C3 Fabs (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

PDB-7qtk:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD down - 1-P2G3 Fab (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Fenwick C, Perez L, Pojer F, Stahlberg H, Pantaleo G, Trono D

EMDB-13190:
P5C3 is a potent fab neutralizer
Method: single particle / : perez L

EMDB-13265:
the local resolution of Fab p5c3.
Method: single particle / : perez L

EMDB-13415:
MaP OF P5C3RBD Interface
Method: single particle / : Perez L

PDB-7p40:
P5C3 is a potent fab neutralizer
Method: single particle / : perez L

PDB-7phg:
MaP OF P5C3RBD Interface
Method: single particle / : Perez L

EMDB-2029:
Repair complexes of FEN1, DNA and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability
Method: single particle / : Querol-Audi J, Yan C, Xu X, Tsutakawa SE, Tsai M, Tainer JA, Cooper PK, Nogales E, Ivanov I

EMDB-2030:
Repair complexes of FEN1, DNA and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability
Method: single particle / : Querol-Audi J, Yan C, Xu X, Tsutakawa SE, Tsai M, Tainer JA, Cooper PK, Nogales E, Ivanov I

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more